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How do I upload a FASTA file to R if it contains multiplexed data?
I was hoping to use the seqinr method to upload FASTA files to R for analysis. However, they are multiplexed sequences.
library(seqinr)
dnafile <- system.file("sra_data-3.fasta", package...
hank00000
Votes: 0
Answers: 1
Faster algorithm for lexicographic comparison of DNA strings
I'm trying to find a faster way to do the following:
Given a list of DNA strings x = ([s1, s2, s3, s4...]) (where the strings can only consist of the letters 'A', 'T', 'C', and 'G') and a list of inde...
nunya
Votes: 0
Answers: 0
Counting bases in a sequence - Nonetype
I am trying to create a function where the user is able to input a file name (containing a DNA sequence), and the respective number of bases present in the selected file are counted and output onto th...
heather_l
Votes: 0
Answers: 1
Calculate sample proportions for n=1000 and mean of sample proportions in R
I want to calculate the mean of the sample proportions of 5-Mers that are AATAA. But stuck in obtaining 100 samples each of length 1000 of sample proportion of 5-MERS that are AATAA from the first 100...
Khurram Basharat
Votes: 0
Answers: 0