1 year ago
#287480
Khurram Basharat
Calculate sample proportions for n=1000 and mean of sample proportions in R
I want to calculate the mean of the sample proportions of 5-Mers that are AATAA. But stuck in obtaining 100 samples each of length 1000 of sample proportion of 5-MERS that are AATAA from the first 100,000 nucleotides of NC_006620.3
library(ape)
library(seqinr)
library("stringr")
dog_ch38 <- read.GenBank("NC_006620.3") #
dog_ch38 <- str_to_upper(dog_ch38)
enter code here
get_DNA_sample <- function(DNA, n){
N <- str_length(DNA)
start <- sample(1:(N - n + 1), size = 1)
return(str_sub(DNA, start, start + n - 1))
}
get_DNA_sample(dog_ch38, 1000)
r
bioinformatics
dna-sequence
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